TIP: If your query does not appear in the pulldown menu -> it is not in interval format. Use "edit attributes" to set chromosome, start, end, and strand columns.

Screencasts!

See Galaxy Interval Operation Screencasts (right click to open this link in another window).

Syntax

• Both queries are exactly the same filetype will preserve all extra fields in both files. Leaving this unchecked will force the second query to use the same column assignments for chrom, start, end and strand, but will fill extra fields with a period(.). In both cases, the output fields are truncated or padded with fields of periods to maintain a truly tabular output.

Example